FoldReport — one protein (ubiquitin), multiple models

Ranking by confidence

Min confidence: 0

#	Prediction	Tool	Confidence	Mean pLDDT	pTM	ipTM	mpDockQ	Chains	Residues
1	UBIQ_RABIT (P62975)	alphafold_db	0.956	95.6	N/A	N/A	N/A	1	76
2	2026_06_20_22_33_model_0	af3_server	0.850	94.5	0.850	N/A	N/A	1	76
3	2026_06_20_22_33_model_1	af3_server	0.850	94.1	0.850	N/A	N/A	1	76
4	2026_06_20_22_33_model_2	af3_server	0.850	94.5	0.850	N/A	N/A	1	76
5	test_7686d_rank_001	colabfold	0.840	96.0	0.840	N/A	N/A	1	76
6	test_7686d_rank_002	colabfold	0.840	95.5	0.840	N/A	N/A	1	76
7	2026_06_20_22_33_model_3	af3_server	0.840	94.4	0.840	N/A	N/A	1	76
8	2026_06_20_22_33_model_4	af3_server	0.840	94.3	0.840	N/A	N/A	1	76
9	test_7686d_rank_003	colabfold	0.830	95.4	0.830	N/A	N/A	1	76
10	test_7686d_rank_004	colabfold	0.820	95.3	0.820	N/A	N/A	1	76
11	test_7686d_rank_005	colabfold	0.800	93.9	0.800	N/A	N/A	1	76
12	input_1_sample_1	openfold3	0.132	78.5	0.661	0.000	N/A	1	76

Per-prediction detail

UBIQ_RABIT (P62975)

↑ ranking

alphafold_db · 1 chains · 76 residues

Confidence 0.956Mean pLDDT 95.6pTM N/AipTM N/AmpDockQ N/ATool rank 1

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Modelv6

Database snapshot1987-08-13T00:00:00Z

Created2025-08-01T00:00:00Z

OrganismOryctolagus cuniculus

DescriptionUbiquitin

Source files

structureAF-P62975-F1-model_v6.cif

paeAF-P62975-F1-predicted_aligned_error_v6.json

metadataAF-P62975-F1-metadata.json

2026_06_20_22_33_model_0

↑ ranking

af3_server · 1 chains · 76 residues

Confidence 0.850Mean pLDDT 94.5pTM 0.850ipTM N/AmpDockQ N/ATool rank 1

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Seeds2044255012

Request dialectalphafoldserver v3

Source files

structurefold_2026_06_20_22_33_model_0.cif

summaryfold_2026_06_20_22_33_summary_confidences_0.json

full_datafold_2026_06_20_22_33_full_data_0.json

2026_06_20_22_33_model_1

↑ ranking

af3_server · 1 chains · 76 residues

Confidence 0.850Mean pLDDT 94.1pTM 0.850ipTM N/AmpDockQ N/ATool rank 2

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Seeds2044255012

Request dialectalphafoldserver v3

Source files

structurefold_2026_06_20_22_33_model_1.cif

summaryfold_2026_06_20_22_33_summary_confidences_1.json

full_datafold_2026_06_20_22_33_full_data_1.json

2026_06_20_22_33_model_2

↑ ranking

af3_server · 1 chains · 76 residues

Confidence 0.850Mean pLDDT 94.5pTM 0.850ipTM N/AmpDockQ N/ATool rank 3

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Seeds2044255012

Request dialectalphafoldserver v3

Source files

structurefold_2026_06_20_22_33_model_2.cif

summaryfold_2026_06_20_22_33_summary_confidences_2.json

full_datafold_2026_06_20_22_33_full_data_2.json

test_7686d_rank_001

↑ ranking

colabfold · 1 chains · 76 residues

Confidence 0.840Mean pLDDT 96.0pTM 0.840ipTM N/AmpDockQ N/ATool rank 1

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Modelalphafold2_ptm

Tool version1.6.1

Seeds0

MSA modemmseqs2_uniref_env

Recycles3

TemplatesNo

Model number4

Source files

structuretest_7686d_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb

scorestest_7686d_scores_rank_001_alphafold2_ptm_model_4_seed_000.json

test_7686d_rank_002

↑ ranking

colabfold · 1 chains · 76 residues

Confidence 0.840Mean pLDDT 95.5pTM 0.840ipTM N/AmpDockQ N/ATool rank 2

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Modelalphafold2_ptm

Tool version1.6.1

Seeds0

MSA modemmseqs2_uniref_env

Recycles3

TemplatesNo

Model number2

Source files

structuretest_7686d_unrelaxed_rank_002_alphafold2_ptm_model_2_seed_000.pdb

scorestest_7686d_scores_rank_002_alphafold2_ptm_model_2_seed_000.json

2026_06_20_22_33_model_3

↑ ranking

af3_server · 1 chains · 76 residues

Confidence 0.840Mean pLDDT 94.4pTM 0.840ipTM N/AmpDockQ N/ATool rank 4

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Seeds2044255012

Request dialectalphafoldserver v3

Source files

structurefold_2026_06_20_22_33_model_3.cif

summaryfold_2026_06_20_22_33_summary_confidences_3.json

full_datafold_2026_06_20_22_33_full_data_3.json

2026_06_20_22_33_model_4

↑ ranking

af3_server · 1 chains · 76 residues

Confidence 0.840Mean pLDDT 94.3pTM 0.840ipTM N/AmpDockQ N/ATool rank 5

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Seeds2044255012

Request dialectalphafoldserver v3

Source files

structurefold_2026_06_20_22_33_model_4.cif

summaryfold_2026_06_20_22_33_summary_confidences_4.json

full_datafold_2026_06_20_22_33_full_data_4.json

test_7686d_rank_003

↑ ranking

colabfold · 1 chains · 76 residues

Confidence 0.830Mean pLDDT 95.4pTM 0.830ipTM N/AmpDockQ N/ATool rank 3

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Modelalphafold2_ptm

Tool version1.6.1

Seeds0

MSA modemmseqs2_uniref_env

Recycles3

TemplatesNo

Model number3

Source files

structuretest_7686d_unrelaxed_rank_003_alphafold2_ptm_model_3_seed_000.pdb

scorestest_7686d_scores_rank_003_alphafold2_ptm_model_3_seed_000.json

test_7686d_rank_004

↑ ranking

colabfold · 1 chains · 76 residues

Confidence 0.820Mean pLDDT 95.3pTM 0.820ipTM N/AmpDockQ N/ATool rank 4

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Modelalphafold2_ptm

Tool version1.6.1

Seeds0

MSA modemmseqs2_uniref_env

Recycles3

TemplatesNo

Model number1

Source files

structuretest_7686d_unrelaxed_rank_004_alphafold2_ptm_model_1_seed_000.pdb

scorestest_7686d_scores_rank_004_alphafold2_ptm_model_1_seed_000.json

test_7686d_rank_005

↑ ranking

colabfold · 1 chains · 76 residues

Confidence 0.800Mean pLDDT 93.9pTM 0.800ipTM N/AmpDockQ N/ATool rank 5

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

Predicted Aligned Error hover for residue-pair error

Expected position error

0 Å31.8 Å

DownloadPNG (300 dpi)PDF (vector)

Provenance & reproducibility

Modelalphafold2_ptm

Tool version1.6.1

Seeds0

MSA modemmseqs2_uniref_env

Recycles3

TemplatesNo

Model number5

Source files

structuretest_7686d_unrelaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb

scorestest_7686d_scores_rank_005_alphafold2_ptm_model_5_seed_000.json

input_1_sample_1

↑ ranking

openfold3 · 1 chains · 76 residues

Confidence 0.132Mean pLDDT 78.5pTM 0.661ipTM 0.000mpDockQ N/ATool rank 1

3D structure colored by pLDDT

Very highConfidentLowVery low

DownloadPNG (300 dpi)PDF (vector)

PAE not available

Provenance & reproducibility

Seeds42

Sourceseed_42

Source files

structureinput_1_sample_1.cif

server_jsonopenfold3.json